Team
From Liebel-lab
Liebel-Lab core team (in alphabetical order)
Christen, Michael, Dipl. Info, external
Research interests: Search engine technologies (YACY) </u>
Expertise:
- YaCY http://yacy.net
- Sciencenet http://sciencenet.kit.edu
email: mc (at) yacy.net
Dhillon, Sundeep Singh, PhD student, Biologist
(further information about Sundeep) Research interests:
- Relating biological data to chemical structure of compounds
- Novel phenotyping tools/techniques
Expertise:
- Zebrafish screens
- Zebrafish assay development
- Microscopy
coordinates [Google maps] building 341 office 128
email: sundeep. dhillon (at) kit.edu
Gehrig Jochen, PhD, biologist
(further information about Jochen)
Expertise:
- Zebrafish screens
- Zebrafish assay development
- Microscopy
coordinates [Google maps] building 341 office 130
email: jochen.gehrig (at) kit.edu
Gursky Eduard, Dipl. Info. software engineer
Expertise:
- LabView
- processor hardware
- lab automation
- developments
email: Eduard.Gursky (at) kit.edu
Kindler Björn, PhD Database architect (part time)
Expertise:
- Large scale data integration Bioinformatic Harvester
- Application Software Consultant
- Database architect
email: Bjoern (at) bkmk.de
Liebel Urban, Phd PI (Group Leader)
Urban_liebel CV
Research interests: applied bioinformatics, screening technology development
Expertise:
- bioinformatic data integration (Bioinformatic Harvester)
- cell based high content screening
- zebrafish based high content screening
- scientific instrument development
- large scale search engines (Sciencenet)
- lab automation, robotics
coordinates [Google maps] building 341, office 155
email: urban.liebel (at) kit.edu
Lütjohann Dominic, Dipl.-Inf., PhD student
Research interests: Life Science Informatics
Expertise:
- bioinformatic data integration (Bioinformatic Harvester)
- large scale search engines (Sciencenet Sciencenet)
- lab automation, robotics
coordinates [OpenStreetMap] building 341, office 128
email: dominic.luetjohann (at) kit.edu
Peravali, Ravindra, Dipl Eng.
(further information about Ravindra Peravali)
Research interests:
- Signal and Image Processing
- Time-Frequency Distributions
- Novel Sensors
Expertise:
- Microscopic Image Processing
- Computer Aided Microscopy (CAM)
- Matlab
coordinates [Google maps] building 341
email: ravindra.peravalli (at) kit.edu
Richter, Florian, informatics, Bachelor student
Research interests:
- Search engine technology
- Distributed annotation
Expertise:
- YaCY project http://yacy.net
coordinates [Google maps] building 341
email: florian.richter (at) student.kit.edu
Schindler, Sebastian biologist, Master student
Research Interests:
- Zebrafish assays,
- Image processing,
Expertise:
- Zebrafish screens
Coordinates:
[Google Maps] building 341 office 128
Email: sebastian.schindler (at)student.kit.edu
Shah Asmi, M.Sc. Computer Science, PhD Student
Research Interests:
- Bioinformatics,
- Multidimensional Visualization,
- High Throughput Data handling / analysis
Expertise:
- Bioinformatics,
- Automata Theory
Coordinates:
[Google Maps] building 341
Email: Asmi.Shah (at) kit.edu
Alumni: former screening group members
Knese Karsten, BA, Informatics (Acquifer - transparent data logistic)
Research interests: Search engine technology, robotics, artificial intelligence
Expertise:
- programming java & .net
- cloud computing
coordinates [Google maps] building 717 office 213
email: Karsten.Knese (at) kit.edu
Meier Georg, BA, Informatics (Acquifer - transparent data logistic)
Research interests: Search engine technology
Expertise:
- programming java & .net
- cloud computing
coordinates [Google maps] building 717 office 213
email: Georg.Meier (at) kit.edu
Hötzel Sebastian, Technical assistant
Expertise:
- zebrafish facility management
- lab management
- microscopy
email: Sebastian.Hoetzel 2 (at) kit.edu
Temizer Incinur, physicist , Master Student
Research Interests:
- Advanced light microscopy,
- Image processing
- Computer Aided Microscopy
- Systems neuroscience
Expertise:
- Biomedical optics,
- Matlab
Coordinates:
[Google Maps] building 341
Email: Incinur.Temizer (at) student.kit.edu
Trunov Artem, Physicist, (Acquifer - transparent data logistics)
Research interests: hardware, large scale storage systems,
Expertise:
coordinates [Google maps] building 717
email: Artem.Trunov (at) kit.edu
Ziegener Bertram, Trainee (IAI) Bio-Robotics group
Research interests: robotics, automated microscopy
Expertise:
- LabView
- Development of robotic microscopes
coordinates [Google maps] building 445
email: Bertram.Ziegener (at) kit.edu
Legradi Jessica, Dipl. Bioinf. , PhD student
(further information about: Arraybay)
Research interests: applied bioinformatics, zebrafish in toxicology
Expertise:
- Microarray data analysis
- Microarray design
- Toxicogenomics
- Toxicology based zebrafish screening
- Assay development
email: Legradi (at) web.de
Jeridi Semir, Dipl. Bio. , PhD student (ITG/ Uni Heidelberg)
Semir Jeridi is a joint Phd (Frings Lab Uni Heidelberg / Liebel-Lab KIT). Currently he is at Heidelberg University chasing Ion channels under the microscope.
Expertise:
- Electrophysiology
- Screening assay development
- LabView developments
email: Semir.Jeridi (at) zoo.uni-heidelberg.de
Gröbner, Nadine, Technical assistant
(further information about: Nadine)
Expertise in the Liebel group:
- Lab and screening facility management
- Zebrafish handling/crossing
- Wiki server maintenance
Main projects in the Liebel group:
- Leica-LSI -> CAM (Computer Aided Microscope)
coordinates [Google maps] building 436, office 109
email: Nadine.Groebner (at) kit.edu
Collaborations in alphabetic order:
- Christen, Michael Peter, Dipl Inf (Frankfurt)
- "SCIENCENET a p2p based search engine for bioinformatic knowledge based on YaCy technology"
- Peterson Randy, (Harvard) -
- "Development of tools for zebrafish screens"
- Boutros Michael, (DKFZ) -
- "Development of imaging techniques for drosophila high content screening assays"
- Grabher Clemens, (KIT)
- "Development of small molecule screening assays"
- Mueller Ferenc, Dr. (Birmingham University)
- "Development of zebrafish High Content Screening assays"
- Wezel, Jos van, Dr. rer nat (KIT - SCC)
- "Large Scale Data Facility"
Past Collaborations in alphabetic order:
- Burmeister, Ole, Dipl Inf (KIT - IAI)
- "Development of cluster scheduling software for heterogeneous networks"
- Epstein Avi, Dr. (EMBL Heidelberg)
- "Development of a ASIC for ultra fast sequence searches in live science applications"
Industrial Collaborations in alphabetic order:
- Caliper life science
- genome wide siRNA screening platform
- Leica Microsystems (Frank Sieckmann)
- Development of CAM (Computer Aided Microscopy) applications. ("Matrix-Scan" software + LabView interface)
- Olympus Europa
- Sponsor: KIT Karlsruhe Institute of Technology Screening facility"
- Olympus SIS (soft imaging solutions)
- "Development of High Content Screening microscope platforms"
